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SRX21025521: 19_Nodule
1 ILLUMINA (Illumina HiSeq 3000) run: 162.6M spots, 48.8G bases, 16.4Gb downloads

Design: ILM-Illumina RNA-seq library construction
Submitted by: United States Department of Agriculture
Study: A reference assembly for the legume Vicia villosa
show Abstracthide Abstract
Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop in the United States Midwest due to an ability to withstand harsh winters. The highly heterozygous nature of the V. villosa assembly precluded prior genome assembly using short-reads, leaving this species without suitable genomic resources for genetic selection. A reference-quality genome assembly was prepared from low error rate long sequence reads to improve genetic-based trait selection of this species. This reference genome assembly was further filtered for duplicate sequences and was scaffolded using Hi-C reads to provide the first contiguous assembly for the species.
Sample: 19_Nodule
SAMN36452501 • SRS18298187 • All experiments • All runs
Organism: Vicia villosa
Library:
Name: Vvillosa19_Nodule_RNA-Seq
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 162.6M spots, 48.8G bases, 16.4Gb
Run# of Spots# of BasesSizePublished
SRR25280485162,610,84148.8G16.4Gb2023-07-14

ID:
28460114

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